Load libraries | Setup single cell data | Perform dimensionality reductions | Converting to SingleCellExperiment object | Plotting single cell data | Calculate hexagon cell representation | Plot number of cells/nuclei in each hexagon cell | Plot meta data in hexagon cell representation | Plot gene expression in hexagon cell representation | Understanding schex output as ggplot objects

Load libraries | Setup single cell data | Filtering | Normalization | Dimension reduction | Clustering | Plotting single cell data | Calculate hexagon cell representation | Plot number of cells/nuclei in each hexagon cell | Plot meta data in hexagon cell representation | Plot gene expression in hexagon cell representation | Understanding schex output as ggplot objects